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View Structure Prediction Details

Protein: CE30532
Organism: Caenorhabditis elegans
Length: 558 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30532.

Description E-value Query
Range
Subject
Range
gi|28478878, gi|... - gi|75832049|ref|NP_001028461.2| solute carrier family 9 (sodium/hydrogen exchanger), member 2 [Mus m...
267.0 [0..47] [543..57]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTNLWPGAK TKVVEFFNNN HVNQIVTFFI IVSGIYVTMV SITGQNFLHP LSPVTSNSLN  60
   61 LQNAANEVLH SIISCFMMVV LAVAAGKLVK FIYTPSLIGC MLVGIAMRNV PQFGEL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FYINEYWQFI LRKLSLVVII IRWGISINVR FIKKNYIFPP ILGLGSAFSE ALAICFTACV  60
   61 FFDFPLSLGL ICGFVVATVS PAVGMPTMIR LKEQGIGTTN NIPDVVPAAC CFDNVVSLLI 120
  121 FSVTSSVTFT HD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [249-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFFLTMVKSI GAIVLAAIIG CVIGWLLRWF PKNDNRHTHF ARFLVIASPA YAVITSMLIL  60
   61 GYAFPGIVSA LCICCVSTTH WREDN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [334-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKGIKVLVHQ FDNLWYFVAV PLLFSLVGYT FDFQNMSAEN WKTAFIIIAV GSSFRLISAM  60
   61 ILSYYGHFNI YEQIILALTL MPKATVQCAL APSLIFMTNG FPELREQTKL IINICITAVM 120
  121 VTSPIVEILL DVLAPRILKI KEG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [477-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSTYNRNITN STILDEMDPN LELKKTSSSN STNNSRTNLN NRIIYELNPN FVPISIENGY  60
   61 SRASYQHSNN TKTYASGNRI NK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 1gpjA
Description: Glutamyl tRNA-reductase dimerization domain; Glutamyl tRNA-reductase middle domain; Glutamyl tRNA-reductase catalytic, N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle