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View Structure Prediction Details

Protein: CE29735
Organism: Caenorhabditis elegans
Length: 518 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29735.

Description E-value Query
Range
Subject
Range
gi|187023689, gi... - gi|39588313|emb|CAE72664.1| Hypothetical protein CBG19878 [Caenorhabditis briggsae], gi|187023689|em...
gi|157757161 - gi|157757161|ref|XP_001670924.1| Hypothetical protein CBG19878 [Caenorhabditis briggsae AF16]
1007.0 [0..1] [517..1]

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Predicted Domain #1
Region A:
Residues: [1-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKPFIIKCS IFLLLILCSV ESSEFGVTLG DAAISQLIRH TASQFLEETR VADILLKSNE  60
   61 EPSFGSLAHL KLFNTVSYRN VSVQFRPKVV HVFFENLNVT SHANLSDVIW PIPFSDSLVD 120
  121 SHVKVPRGHL RFIVDDQKVT LSKCALFNPD IAFQLRDSWL INKGISAFSS MASSFFEGAL 180
  181 CSALSSSTND LKHKAERKFP IYEFLPKKVQ DHMAARNTTL FYRVNSINAD DHQLTVRAQI 240
  241 EWQKLIPAAN DEASNLLKGQ EEHG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [265-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSTKLLDMEM KNGDLITVWL EDAILNEILD QIDWNFEWMD EQIPVTSPII PPDSREFLST  60
   61 LCSECYFQVN VNAKGRPTIT ATNSSLQLTK TDRIHLQVVN PQQQKTTVFV SLVLTITAAL 120
  121 RPSFD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [390-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGTLRTGVDL LETNIVMENG AFPKAWGAFM TDLIRGMIMD MMWPEMQSAI EDLTYGKGLK  60
   61 LSKFCGIDPN NVAIEIAEGS FSLSTRLVLP MFQSEICLKD LKSSIPNTSK LLQKSQASSF 120
  121 SRKRRSPFF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle