YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: paf-2
Organism: Caenorhabditis elegans
Length: 190 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for paf-2.

Description E-value Query
Range
Subject
Range
paf-2 - status:Confirmed UniProt:Q22943 protein_id:AAL65779.1
171.0 [0..1] [190..1]

Back

Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSYISSPQV LTRQVSGQFQ VGCKDLMIDG TVLGDRGLFM RLYFPTDSQA ADISSYPLWL  60
   61 PKPQYAHGLG EYLGQSSQKM NVITSTVVGE KREDCIENAQ MSTKCDKWPI VVFSHGLGGS 120
  121 RTFYSTYCTS LASHGYVVAA VEHKDHSACW TYQLTEKNGE LVEQPIKIKL IEKNEKNEFK 180
  181 IRNQQVSVKV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1ve6A
Description: Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle