YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: paf-2
Organism: Caenorhabditis elegans
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for paf-2.

Description E-value Query
Range
Subject
Range
gi|157769427 - gi|157769427|ref|XP_001676534.1| Hypothetical protein CBG14389 [Caenorhabditis briggsae AF16]
gi|187027869, gi... - gi|39597864|emb|CAE68556.1| Hypothetical protein CBG14389 [Caenorhabditis briggsae], gi|187027869|em...
265.0 [0..1] [388..1]

Back

Predicted Domain #1
Region A:
Residues: [1-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSYISSPQV LTRQVSGQFQ VGCKDLMIDG TVLGDRGLFM RLYFPTDSQA ADISSYPLWL  60
   61 PKPQYAHGLG EYLGQSSQKM NVITSTVVGE KREDCIENAQ MSTKCDKWPI VVFSHGLGGS 120
  121 RTFYSTYCTS LASHGYVVAA VEHKDHSACW TYQLTEKNGE LVEQPIKIKL IEKNEKNEFK 180
  181 IRNQQVGKRV TECVKALNVL EQLNLGTVPE KVLIGNDYNW AQFKNKLVMS SASVIGHSFG 240
  241 GATSLASSAY TTDFQKAIVF DGWMYPLDST QQEQAKQPTL FLNVGDWQWN ENLDVMKKII 300
  301 SHNDGNLALT LNGAVHQCFS DFPFIFPSWL AKKFGVQGRT EPSLCMQAAI ELSLAFLENG 360
  361 KDGAQKLKDE KFSSFISNEI YGREKYKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.30103
Match: 1jfrA
Description: Lipase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 0.0257032529616518 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle