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View Structure Prediction Details

Protein: CE30433
Organism: Caenorhabditis elegans
Length: 107 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30433.

Description E-value Query
Range
Subject
Range
gi|50800573 - gi|50800573|ref|XP_424134.1| PREDICTED: hypothetical protein [Gallus gallus]
116.0 [0..1] [107..1]
gi|39582094, gi|... - gi|39582094|emb|CAE63737.1| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi|187032828|em...
gi|157747115 - gi|157747115|ref|XP_001668652.1| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]
115.0 [0..1] [107..1]
gi|56757219 - gi|56757219|gb|AAW26781.1| SJCHGC01207 protein [Schistosoma japonicum]
115.0 [0..1] [107..1]
gi|10177851, gi|... - gi|67633816|gb|AAY78832.1| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi|15238...
114.0 [0..5] [107..10]
gi|110765226, gi... - ref|XP_392860.1| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi|110765226|ref|XP_00...
113.0 [0..1] [107..1]
gi|68397381 - gi|68397381|ref|XP_686604.1| PREDICTED: similar to 60S acidic ribosomal protein P2 [Danio rerio]
112.0 [0..1] [107..158]
gi|77416939 - gi|77416939|gb|ABA81865.1| unknown [Solanum tuberosum]
110.0 [0..1] [72..1]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLGAYLLA TLGGNASPSA QDVLKVLEAG GLDCDMENAN SVVDALKGKT ISEVIAQGKV  60
   61 KLSSVPSGGS APAAAAPSGG AAPKAEEKKK EEPKEESDDD MGFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.920819
Match: PF00428.10
Description: No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.430 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.399 N/A N/A a.39.1 EF-hand
View Download 0.397 N/A N/A a.77.1 DEATH domain
View Download 0.396 N/A N/A a.39.1 EF-hand
View Download 0.368 N/A N/A a.4.1 Homeodomain-like
View Download 0.326 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.287 N/A N/A a.39.1 EF-hand
View Download 0.269 N/A N/A a.144.2 Ribosomal protein L20
View Download 0.266 N/A N/A a.4.1 Homeodomain-like
View Download 0.241 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.234 N/A N/A a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle