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View Structure Prediction Details

Protein: CE29685
Organism: Caenorhabditis elegans
Length: 469 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29685.

Description E-value Query
Range
Subject
Range
gi|7496732 - gi|7496732|pir||T15718 hypothetical protein C30G12.1 - Caenorhabditis elegans
653.0 [0..53] [469..35]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSLHYFIL PLIGNALILN TPPEYQPGYG YVGPACAVFV SIRRKQFENI FQIFQDSTLF  60
   61 LHGVSKRKLN DHELHIFSSY QHDLSAFKDS SSSFDSFEAS FPTIPKFCG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYDDSIEVVL DSCIVRNNHV YVGDHLIRPL TNFEKQKIQL VKMRRMYGES KRKRSKRSSK  60
   61 PLPGTRPQRD FSEMLHKLLN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 1f32A
Description: Pepsin inhibitor-3
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [190-332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INSTVTSRFL PVVSQSPLFA MEGPWQNLFE LGKDKDMIEL LAASQFKPQL PPVASVPVAP  60
   61 VIDITKIDSP YRATFTTMKP RKSQKPEKKK EVFNVFTTKT NPQITTTTMT TTTRTSTAIP 120
  121 TTTTTPRQIS LQTIPFSTTT RQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [333-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFDKTKTPAT MPSASSSSLS SIQTVVDPII LKLISKALEK NEMIDEYSLK QALSMRNVAT  60
   61 TTTPLPLRFI LPTPAAPNPF LPSTRVGGLS HNHLFIPHQP FTTLVSTDSR YSAPNPLSHR 120
  121 LPNEICRVHM NSNPFHF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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