Protein: | gar-1 |
Organism: | Caenorhabditis elegans |
Length: | 622 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar-1.
Description | E-value | Query Range |
Subject Range |
|
328.0 | [0..1] | [622..1] |
Region A: Residues: [1-280] |
1 11 21 31 41 51 | | | | | | 1 MPNYTVPPDP ADTSWDSPYS IPVQIVVWII IIVLSLETII GNAMVVMAYR IERNISKQVS 60 61 NRYIVSLAIS DLIIGIEGFP FFTVYVLNGD RWPLGWVACQ TWLFLDYTLC LVSILTVLLI 120 121 TADRYLSVCH TAKYLKWQSP TKTQLLIVMS WLLPAIIFGI MIYGWQAMTG QSTSMSGAEC 180 181 SAPFLSNPYV NMGMYVAYYW TTLVAMLILY KGIHQAAKNL EKKAKAKERR HIALILSQRL 240 241 GTQVGVSLML QSKAEKEKAE EAQKDSGYTS NQAGGSLNTE |
Detection Method: | |
Confidence: | 32.522879 |
Match: | 1f88A |
Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [281-453] |
1 11 21 31 41 51 | | | | | | 1 NDQNLGVIEE ERSGFLSRRE SNESYYPGPH PTAANSRRCS EMEKVSLLSE SDGVPSTRPA 60 61 KSYGRLSLRS RYSASESITT THENDEKEVE KADSLQKLFA DDELGSVLNF KEEKLKNTDS 120 121 NNDSDTTSVI LQRSRKYKKN KRPRSSRRSE HSTPRQIAKV KQAEGTAAQL IEE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [454-622] |
1 11 21 31 41 51 | | | | | | 1 SVPDDDQTET IEVKRTDRWV VSMKKRIARA LIRRRSTTRP ERGSSSNSEK ISTISTVITR 60 61 EKVISSIFAP IAVFNRGRKQ TKAEKRAHKA FRTITFIVGF FAILWSPYYI MATVYGFCKG 120 121 ECIPSFLYTL SYYMCYLNSS GNPFAYALAN RQFRSAFMRM FRGNFNKVA |
Detection Method: | |
Confidence: | 4.1 |
Match: | 1f88A |
Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |