YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE30593
Organism: Caenorhabditis elegans
Length: 663 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30593.

Description E-value Query
Range
Subject
Range
gi|157750524 - gi|157750524|ref|XP_001678974.1| Hypothetical protein CBG12960 [Caenorhabditis briggsae AF16]
gi|187028985, gi... - gi|39595956|emb|CAE67459.1| Hypothetical protein CBG12960 [Caenorhabditis briggsae], gi|187028985|em...
897.0 [0..1] [661..1]

Back

Predicted Domain #1
Region A:
Residues: [1-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTGETKVI ESHGTIKKID SLSTMPYCGV ETDENAVVEE KITLESGKSW SPKHYELLHE  60
   61 RIERLIDEKQ QFFSLEFFPP RFVNGVPNFL ERVERLSEGG SVFVDMTWHM GSDPANVDKV 120
  121 TSSSSIAASM LDYCGVDTML HMTCVQYNKA DTLKHLEQAK AMGLRSILAL RGDLPPGTEL 180
  181 EDTHQFRALD MIRWIREEYG NYFSIGCAGY PLGHPQAPSY KADLMYLKAK CDAGANFVIT 240
  241 QLFFEAETFE KFVRDCREIG ITQPIIPGIM PIMGYESIKR IAKLSQLEIP QHILDDLEPI 300
  301 KHDDDAVQKY GTERCIEMCR RLLDNGTAPS IHLYTMNREG SIREILKSLG LWK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.69897
Match: 1zp3A
Description: E. coli Methylenetetrahydrofolate Reductase (oxidized)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [354-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEGDRVFPWK NRSQHPIRCL ESVRPIYWSF RPRSYITRTR DWDQFPNGRW GNSSSPAFGD  60
   61 VSSYYLSNLT TVRNADDRLA MFGANIESFE DVKRVFINYI TQAPNADGVK VTVLPWTEAE 120
  121 TGVQPETSLI SEQLVWCNEN GILTVNSQPS VNGAPSTDPL VGWGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [519-663]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGGYCYQKAY LECFMTAELS DKLIQIIERE FPVRVNYHAI NKDSTFDKTN SEETTPIAVT  60
   61 WGVFPGSEIA QPTVVDPLSF RAWRDEAYQM WMAQWGDFYP KESKSYGVIK AVHDEFRLVT 120
  121 LVDNDFQKPS VLFDVLQKAL DELKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle