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View Structure Prediction Details

Protein: CE30584
Organism: Caenorhabditis elegans
Length: 494 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30584.

Description E-value Query
Range
Subject
Range
gi|39594534, gi|... - gi|39594534|emb|CAE72112.1| Hypothetical protein CBG19205 [Caenorhabditis briggsae], gi|187024451|em...
gi|157764460 - gi|157764460|ref|XP_001674573.1| Hypothetical protein CBG19205 [Caenorhabditis briggsae AF16]
375.0 [0..1] [494..1]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTATAMLSG ASSTFAGVVG DFDQSSVLWA LIVGIILAFL LGAGMGANDV SNAFGTSVGS  60
   61 GVLTIIQAYI LASIFETLGS VLVGWSVVDT MRKGVVDISQ YENTPKEFLL GQIAVLGGCS 120
  121 AWLLIATVLH MPVSTTHSLV GATIGFSVVL RGFNGIQWMA IVKIVCSWFI SPVLSGIISS 180
  181 IIYMIVDHTV LRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [194-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANPLKNGLRA LPVFYFVCMA FNALMVFWDG SKLLHFDEIP VWGIVIIVLG VGTIAAAFAN  60
   61 FVMKPRIRAK IQDSEAPPTP PMFSDVESAR GSAELEEFTE GSVTNQQKTM STPGKIRKFF 120
  121 TWLLPDRTRS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [324-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSRSITQLFS TIQVFTACFA GFAHGANDVS NAVAPLAAII SVYRTKSVEQ KEAVPIYVLL  60
   61 YGVLAICIGL WTFGHYVIKT VGTKMSEINP ASGFTIEFGA AMTSLVASKL GLPISTTHCL 120
  121 VGSVVAVGAL RSEDGVKWST FRNIFMSWVI TLPVSGLISA GIMLIIKWAA L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle