YRC Public Data Repository - Protein Structure Prediction

Protein:	CE29407
Organism:	Caenorhabditis elegans
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29407.

Description	E-value	Query Range	Subject Range
RT16_PONAB - 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1 RT16_PONPY - 28S ribosomal protein S16, mitochondrial precursor - Pongo pygmaeus (Orangutan)	157.0	[0..1]	[138..4]
ENSPTRT00000004940 - null MRPS16 - mitochondrial ribosomal protein S16	156.0	[0..1]	[138..4]
gi\|109501187, gi... - ref\|XP_214132.1\| similar to mitochondrial ribosomal protein S16 [Rattus norvegicus], gi\|157817017\|re...	156.0	[0..1]	[136..4]
gi\|157752132 - gi\|157752132\|ref\|XP_001679778.1\| Hypothetical protein CBG02407 [Caenorhabditis briggsae AF16] gi\|39596885, gi\|... - gi\|39596885\|emb\|CAE59112.1\| Hypothetical protein CBG02407 [Caenorhabditis briggsae], gi\|187037437\|em...	154.0	[0..1]	[144..1]
gi\|109089318 - gi\|109089318\|ref\|XP_001103151.1\| PREDICTED: mitochondrial ribosomal protein S16 [Macaca mulatta]	153.0	[0..1]	[138..4]
gi\|114631245 - gi\|114631245\|ref\|XP_508171.2\| PREDICTED: similar to CGI-132 protein [Pan troglodytes]	153.0	[0..3]	[138..126]
RT16_BOVIN - 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2	149.0	[0..1]	[134..4]
gi\|7504408 - gi\|7504408\|pir\|\|T30112 hypothetical protein F56D1.3 - Caenorhabditis elegans	148.0	[0..1]	[147..1]
gi\|89266945, gi\|... - gi\|89266945\|emb\|CAJ81716.1\| mitochondrial ribosomal protein S16 [Xenopus tropicalis], gi\|62858601\|re...	145.0	[0..1]	[123..4]
gi\|115528688, gi... - gi\|189217736\|ref\|NP_001121309.1\| hypothetical protein LOC100158393 [Xenopus laevis], gi\|115528688\|gb...	144.0	[0..1]	[135..4]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLVIPKYY GRPSIGLALF GCTNRPFYHV CVFPDRALGR RYEGNILEQV GTFDPLPNQK  60
   61 NEKLVALNFG RLKYWIGERN AHISVPVLEL LGLSGLFPIH PKSFIRAKDN RALIADQQLK 120
  121 VAAEAAEAEK VAQEQASTGA AATSHPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1pnsP
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits