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View Structure Prediction Details

Protein: CE29388
Organism: Caenorhabditis elegans
Length: 508 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29388.

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
269.0 [0..10] [476..1400]

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Predicted Domain #1
Region A:
Residues: [1-508]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQKVADSEK SVDPVFRITS GPTSLEKDES DSSLDAKEEC FSLADEDAEE TNWRLIYITA  60
   61 VVSFLGAIEG TAVHMSEWPY MREIDPDATV KFFGIASSAS KAAHALFVLI FAVWSFKYKT 120
  121 VKWPLIAGRI IAMVACFIYL CIEYLPTGRR YLMMFCYILF DISGSSPSIL RAYIAAVSMP 180
  181 KDRSKAFAAM SLSMTLSIIC GPLIQMAFTT IPYPGFTIIP HVKFHVYSAP IWIANSTNFI 240
  241 SIAIIVFGMK ELPRKPKTKK PKKPSIFELE GLKMRIQKIK KANIDWILVF VVWIAKCGKT 300
  301 MTARSIGTLL PILMMVQYGW TGIETVRITS FLMGGSGLLS MFVIGSFMFC KLGTIVQPRF 360
  361 IYLFSISLFT MLYIVTYPYK SIGVEVAMYN ATDNTGCDPD KYSWCEGGIA PQPILFLCCM 420
  421 VFVFGMTMPS SAISLDTIYS KILGNIDQSV MQGAAVILDD IMMVITPTYA SYIYTLLGLQ 480
  481 PLWIMNGCIM SCVVGLWIVM LQKFKDYS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle