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View Structure Prediction Details

Protein: CE29368
Organism: Caenorhabditis elegans
Length: 725 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29368.

Description E-value Query
Range
Subject
Range
CE28596 - status:Predicted UniProt:P83384 protein_id:AAA98035.2
758.0 [0..152] [722..301]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPSNQSAW SSNLLNARKR RWKKDEEDEN SNTERNASLD LNLSNVELTE ALDRNGDAQI  60
   61 TPERRRVSPF VDFDDNLDVE SKRNIDLNLT ITPETDIPFD TQPSTSSIAE SSSSPPRTPH 120
  121 SFERSSSPLY SSSDSVGVFS NETPYVKGIR EDLSRERMRF LEVDSILDSI SEKYLQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [177-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNDSQSFQVQ LTHWQTIIFQ EKCRFSNNQL RRVKQNYKMF TDLEIMPTIN LTMQRKTRMS  60
   61 TIDNYKATTY ISKGEKVTVV KIIDVEKSVI PKLERLSVSK QLRHDSYTDG KIVIGIGGDS 120
  121 GGGTTKLCLL IGNCDHANSP HRIVLLAVFD DSDSRELIMA YLSDLIVKIN NFTSITYMED 180
  181 GRVVTRGVVQ KVVGDFKFTC DLLSHKKQCA TYFCPFCFET NPRGGLMQKL KDLNLQKI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [415-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YFLKTMNSYK LNSKYGSFGV RCGSGPILQN VKLEHYLPAM LHLIVGLFTK YIFEPIWMAV  60
   61 IQDANKKFEA SPLKRKREMK AQFTALKEEK VLLDETLDGL AGGYLKQFEN DLEEVGATRR 120
  121 AWFQMYTGNH TKLILSEKGV TAAFKNLKNH MTPMLLNVKN AMSRLSKIMS LSA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [588-725]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRLLSDDDIS ELDESMKEFV EFLQAAHPEE SITQKLHVLV AHVVEVAKTE RNLGRLSEQG  60
   61 IESLHAVFNR LERRFHSVRN TGKRYLTPRL PNKPPSALPH TILNLFAIKI SGFPQYHKIR 120
  121 DFLWLVVKTL TSRYSVQI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle