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View Structure Prediction Details

Protein: klp-7
Organism: Caenorhabditis elegans
Length: 689 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for klp-7.

Description E-value Query
Range
Subject
Range
klp-7 - kinesin, kinesin-13 (MCAK\/KIF-2) family, isoform a status:Confirmed UniProt:Q9XU12 protein_id:CAB07...
470.0 [0..1] [689..59]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVVGMHVEI KRSDGRIHGA VIAEVKSNGR FMVEWYEKGE TKGKESSLEE LLTLNPSLQA  60
   61 PKPTPPPQPP QKTLQASTAV NRQNGIHAQS MI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.963
Match: 2dunA
Description: No description for 2dunA was found.

Predicted Domain #2
Region A:
Residues: [93-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDDEDTFLLD HINMIPAKGA SANKRPTGAF TQHVPVRMAP PSEKPLPTRR APSPKEDAAP  60
   61 APKSTRTTAA FKPDLDSTAI TVPKHTARRT VVVAPAPAPV PAPPIANMTS QRAPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [208-593]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVARVPSPKN VPRSYPQQDV QPSNGNFAFA EMIRNYRAQI DYRPLSMFDG VNENRISVCV  60
   61 RKRPLNKKEL TKAEVDVITI PSRDITILHQ PQTRVDLTKY LDNQKFRFDY SFDEYANNEL 120
  121 VYRFTAAPLV KTVFDNGTAT CFAYGQTGSG KTHTMGGDFS GKKQNASMGI YALTARDVFR 180
  181 MLEQPQYRRK DLSVHCAFFE IYGTKTYDLL NDKAELRVLE DKMQKVQVVG LKEEQAHNEQ 240
  241 DVLELINKGT LVRTAGTTSA NANSSRSHAI FQIILRQGKK VWGKFSLIDL AGNERGQDTR 300
  301 ECDRDTRKEG ANINTSLLAL KECIRGMARN SSHVPFRQSK LTMVLRDSFI GEKSRTVMIS 360
  361 MISPGISSSD HTLNTLRYAD RVKEMG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 101.0
Match: 2gryA
Description: No description for 2gryA was found.

Predicted Domain #4
Region A:
Residues: [594-689]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGSGEATPI RDEELFLPPS ADKSDEEYDE MVEKQEHRRV AVDHVRNLKD MSEKIIRETT  60
   61 IVLSNEPSAA QKAECLAKLD QLAQIVSNTR VAVENV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.221849
Match: 2e7sA
Description: No description for 2e7sA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle