YRC Public Data Repository - Protein Structure Prediction

Protein:	lev-11
Organism:	Caenorhabditis elegans
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lev-11.

Description	E-value	Query Range	Subject Range
gi\|213636 - gi\|213636\|gb\|AAA49509.1\| alpha-tropomyosin gi\|86150 - gi\|86150\|pir\|\|A28499 tropomyosin alpha chain, skin fibroblast - Japanese quail gi\|833620, gi\|104894 - gi\|833620\|emb\|CAA41059.1\| alpha tropomyosin of fibroblasts F2 [Gallus gallus], pir\|\|S24402 alpha-tro...	169.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAIKKKMQA MKIEKDNALD RADAAEEKVR QITEKLERVE EELRDTQKKM TQTGDDLDKA  60
   61 QEDLSAATSK LEEKEKTVQE AEAEVASLNR RMTLLEEELE RAEERLKIAT EKLEEATHNV 120
  121 DESERVRKVM ENRSLQDEER ANTVEAQLKE AQLLAEEADR KYDEVARKLA MVEADLERAE 180
  181 ERAEAGENKI VELEEELRVV GNNLKSLEVS EEKALQREDS YEEQIRTVSS RLKEAETRAE 240
  241 FAERSVQKLQ KEVDRLEELR DAEVLKARQL QDELDHMVQE LNSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits