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View Structure Prediction Details

Protein: nhx-9
Organism: Caenorhabditis elegans
Length: 606 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhx-9.

Description E-value Query
Range
Subject
Range
nhx-9 - Na(+)\/H(+) antiporter status:Confirmed UniProt:P35449 protein_id:CAC42389.1
354.0 [0..1] [606..41]

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Predicted Domain #1
Region A:
Residues: [1-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPISKWCPD SSLLIIVGLA LGWILHQTSL SGATLDSHTF FLYLLPPIIF DAGYFMPNRA  60
   61 LFENFDSVLV FSVFGTIWNT FAIGGSLLLM AQYDLFTMSF TTFEILVFSA LISAVDPVAV 120
  121 IAVFEEIHVN EFLFINVFGE ALFNDGVTVV LYQMFKSFAL IGSENLSVLD YATGGLSFFV 180
  181 VALGGAAVGI IFAIAASLTT KYTYDVRILA PVFIFVLPYM AYLTAEMVSL SSIIAIAICG 240
  241 MLMKQYIKGN VTQAAANSVK YFTKMLAQSS ETVIFMFLGL STISSQHHFD LYFICATLFF 300
  301 CLIYRAIGIV VQCYILNRFR AKKFEMVDQF IMSYGGLRGA IAYGLVVSIP ASITAKPMFI 360
  361 TATIAVIYFT VFLQGITIRP LVNFLKIKKK EER

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.24
Match: 1zcdA
Description: Crystal structure of the Na+/H+ antiporter NhaA
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [394-606]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPTMVESVYN KYLDYMMSGV EDIAGQKGHY TFIENFERFN AKVIKPVLMR HQKRESFDAS  60
   61 SIVRAYEKIT LEDAIKLAKV KNNIQNKRLE RIKSKGRVAP ILPDKISNQK TMTPKDLQLK 120
  121 RFMESGENID SLYTLFSDLL DRKLHEMNRP SVQITDVDGQ DDIQDDYMAE GSRSNLSAMF 180
  181 RSTEQLPSET PFHSGRRQST GDLNATRRAD FNV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 1ei3A
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle