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View Structure Prediction Details

Protein: CE28981
Organism: Caenorhabditis elegans
Length: 465 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28981.

Description E-value Query
Range
Subject
Range
gi|77685416, gi|... - gi|77685416|ref|ZP_00800816.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p:NusB antitermination ...
268.0 [0..19] [464..3]

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Predicted Domain #1
Region A:
Residues: [1-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCLRQSSQS FYFTQIRWKT VKFKTKIAKT KPLKTPSAQA LDHFDFYYGP LFGKKWPSIR  60
   61 LGLLSPNRYL AVMNTMSRNW QAHDEILSDM GAKDLLASIR GKAEDQAIET KRKSVEEKAN 120
  121 RETQKVKHEI SNPSTSTNTE DSEPDEAIFR SAAGLGEFRA SAGELSSGSL QMGLGQSNQN 180
  181 KNVEITGFEG EGVRIPKRDH FFYYPQALHV RSFDRAVLLD FPAPMKDEVG VPSYWLLDGG 240
  241 SLLPVLALGL QKDDSLLDMC AAPGGKSLLA ALSNLPSKIV CNDFKLARLG QLKRALMTYV 300
  301 PEDSETIDKF VLKRKDASDV KTWDEFEAYD KVLVDVPCST DRLSVSTDDG NLFSTGSTQQ 360
  361 RLDLPVLQTK ILVNALRSVK VGGSVVYSTC TLSPSQNEAV VENAVAVVRN DFGIVTVEES 420
  421 LHQLVSHMTS SGLYRFHDTP LGALVVPFLP SNFGPMYICK LTRLQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.045757
Match: 1sqfA
Description: The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009
transcription regulator activity 0.12965224171975 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle