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View Structure Prediction Details

Protein: CE28716
Organism: Caenorhabditis elegans
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28716.

Description E-value Query
Range
Subject
Range
CE22611 - status:Partially_confirmed UniProt:Q9NA85 protein_id:CAB55012.1
305.0 [0..7] [368..265]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDITDVEFTR FIDFLIEKTK DSVEPLTMAS IVFKEFSQLE GDQIPTGYGP YSRFHFKIAP  60
   61 VIDKFHNYSI ETRIRLMFAL GAKVSPEFLA LTREHGIAQL DGRNRICKYE SEDGTLQLGT 120
  121 A

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 58.366532
Match: PF04435.9
Description: No description for PF04435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [122-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSESAKRCSA SDSDQGGAKI AKITEEPQIT QHPTKSEENY ESQIAQLQKL WNNDEYVGSR  60
   61 HEIPSKGPEF KFEHKRDNDL ENPDLFFRKP KSEIDLDEIW HDDDEIEHSI SSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [235-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGNTINFHDF LKKFRKFLCY LEIPELDGLK SRINISIETT SDEILEFADL HKTFETFFFG  60
   61 INRKIRSTAA ANSMPLNVFL IKFKCFLLGL GSPQILDFQH MVQAEIDDPT VVNKILHLND 120
  121 ICQAVSFLFS IIAH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle