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View Structure Prediction Details

Protein: CE28705
Organism: Caenorhabditis elegans
Length: 418 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28705.

Description E-value Query
Range
Subject
Range
CE17407 - WBGene00007638 status:Predicted TR:O62065 protein_id:CAB03891.1
581.0 [0..1] [417..1]

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Predicted Domain #1
Region A:
Residues: [1-55]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQNPVYSP LPLSGTNISQ AEARSHPSKK IVALVLVGTL FFLFSFFLAV ALFGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 2f4mA
Description: The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [56-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTDSDLEPD HQTLTTQNEP IQLGNHRYFA FKYEIVRGKY SHTNKDGSAV KPFIVKNVER  60
   61 HSDEEPYDVY LQKKKRNEEG MIYWKFNLTS TGKVLETLVI RMVGINQTLN GGGKAEACLD 120
  121 TFENCMEIPV NQDLIIDKPQ ADTLFLGIKM YKNMKVFGHA 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.42
Match: 2g9gA
Description: No description for 2g9gA was found.

Predicted Domain #3
Region A:
Residues: [216-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKCMECRELE SGFLVKAYWA QTHLLNISTT YHQGSGPAFA LTPKTGENSA KFKYNFINNS  60
   61 YSHTQPDGSP IRLFNFNGME RVEDYTESDV FLRREIPEKK GNIGWALDLK IDGKSVEKVV 120
  121 IRMIGIEEIA NGGGTARACG HYPTIYPKCA DIPINGTFTF TNYPLDRLFL DIELDEDIQI 180
  181 FKTKLDDESS VENVSVEVYW KPS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.69897
Match: 2g9gA
Description: No description for 2g9gA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle