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View Structure Prediction Details

Protein: coq-2
Organism: Caenorhabditis elegans
Length: 427 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq-2.

Description E-value Query
Range
Subject
Range
gi|71005862, gi|... - gi|71005862|ref|XP_757597.1| hypothetical protein UM01450.1 [Ustilago maydis 521], ref|XP_399065.1| ...
260.0 [0..8] [413..563]

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Predicted Domain #1
Region A:
Residues: [1-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRSIGIAR RSNSINCIVG SNTSTSYSLD ESTKRWISTS TKQPMSLIPT ASSLVASSPP  60
   61 NLKPYLQLMR VDKPIGTWLL YWPCTWSIAM ATPAGQLPSI YMLSLFGAGA FLMRSAGCVI 120
  121 NDLWDKDFDK KVERTKLRPL ACGSLTEKQA IGLLAGLLSS SLAILLQLNW YSVAVGASSM 180
  181 ALVVGYPLAK RFTYWPQFVL GATLNWSVLI AWAELGHFND FGIFLPLYTA TILHTVIYDT 240
  241 IYSHQVELRK AGKKYSKRLT FNWGALLGWC ALKGDLSSSA PFWMYAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [288-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALQWTLIYDT IYAHQDKADD IMIGVKSTAL RLGADTKKWL SAFGVGTVAS LTACGIASDQ  60
   61 TWPYYVALAA TTAQLGWQVG TVDIDNGSDC WDKFKSNSWM GIILFSGIVA STLLKEDEKT 120
  121 KESRKNIGDE NFDDVLVTTN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle