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View Structure Prediction Details

Protein: CE28452
Organism: Caenorhabditis elegans
Length: 471 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28452.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
226.0 [0..3] [438..2307]

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Predicted Domain #1
Region A:
Residues: [1-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTEFVSEEE SKYADSPMRL QGSSASSASV ASRLYGTRSR RDSLGGSSSE SDLIAFGGDQ  60
   61 DALNDFSSQM NQLNSFTKRY SELEERNMSL SDERTRLKTE NSVLKERMHN LEEQLTDNED 120
  121 RFKQLLSDEK ARGTESMSRL KREKELETES WNLKYQMLEK DLISVKKDAE RSNEETKRIR 180
  181 NELEKTENKL EEAQLLVEGM EEERIQLERQ FRKFKEEAQQ DIDSSSEMVE VLALETEELR 240
  241 RKVDGPRSES ISDREDMHEE IEILKAKVAE LMKEKEEMTD QLLATSVERG RSLIADTPSL 300
  301 ADELAGGDSS QLLDALREQE ICNQKLRVYI NGILMRVIER HPEILEIGEE GILSKLTVRR 360
  361 RISVLANVVV IIDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.154902
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [375-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRVIITDTFS KNLRLPSLIV SSMGMNRHMT SSTIGTQFLV TWHATFSLFF SFLHPCDFQN  60
   61 ALLQMFLCTI SSFLVPFTPS NSIFELRATS QIDPVNG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle