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View Structure Prediction Details

Protein: CE28395
Organism: Caenorhabditis elegans
Length: 624 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28395.

Description E-value Query
Range
Subject
Range
CE28394 - status:Partially_confirmed UniProt:Q95QG0 protein_id:AAK72057.1
488.0 [0..1] [622..1]

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Predicted Domain #1
Region A:
Residues: [1-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKEPGVAK SLCIAAVITG VFMLFILVVI LAFSAGGSSG ESLYDKDDPI LELDVDTFSA  60
   61 AIYGSKKAHF IEFYSSWCGA CIGYAPTFKK FAKQLEKWAP LVQVTVVNCA DDKNMPLCRE 120
  121 HSVSSYPSLR YFKYNSHNKD DGMKYSGDKY DINKLAHDIA GLAQADAQKQ NPESWPTFLP 180
  181 LSDTTTLEEV FKSIGTTSYL AIVVQDSPSV IAWANLINYH GNNGVKVAYV TQNHPIATKF 240
  241 FSDGGVHALL FSNGNQEPLW KSSSPVDKWV DVQDKIDELI GDKIAASGPT VHPINAAPVI 300
  301 AAPSNPLNNQ YEVQLVDLKS AMSYMLYKEI PRREEIRDEP MAVLKQWMHT LKKYAPGTTP 360
  361 MRRLFFRLDE WIQLQSVVTA NEWITKVDEI QQALGNPLPK EITWMACAGS KPNLRGYTCG 420
  421 LWTLAHTITV EAYKQEKHNT AFKPVIDVLE PFRAFIFHFL SCSECAQNFT KEAEKNQLHL 480
  481 VTRPEDVYAW LWRVHNFVNK RLSGSLTDDP SF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.0
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [513-624]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKQQFPPKSL CADCYDANGD IDEAKALPFV FKYYSNIKTD STDNLPGYKV VEYKEGKTLS  60
   61 AGQRHLNPKF QVHAGKVDQL EANDKVKNVL DASPQRTWKD IDGYGVLGVP HR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle