YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE28285
Organism: Caenorhabditis elegans
Length: 745 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28285.

Description E-value Query
Range
Subject
Range
gi|187033328, gi... - gi|39596583|emb|CAE63202.1| Hypothetical protein CBG07557 [Caenorhabditis briggsae], gi|187033328|em...
gi|157772030 - gi|157772030|ref|XP_001677835.1| Hypothetical protein CBG07557 [Caenorhabditis briggsae AF16]
757.0 [0..15] [744..9]

Back

Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIIKNQLV KHLSKFTKNL KPEQISLDVL KGNSKLQFIE INEDVLTEIL ELPSWLKIKR  60
   61 AFCTGVAVNV PWTKLKTCPI QIFIDEINVD VELTNEHKKQ AKSNPLGNLG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSSYGFMNK IIENMSLYIS SVEINFDSDV FGGSFMLQRL SVESRSPGWA QVKDLRQTRI  60
   61 TCSETNRTLM FKQLSWHLLR IEASAKTSKN EQRSKINAPL RLITSGGKIR IALKKNVNDG 120
  121 SVIHARIQTI LDDILWVATL PQLRSAISFA SYIAKLVKES QKNDV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [276-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITTSSGNDNP FMKAAGNSAT ADASTISSAY NIFYFDQTSY HLHVKKIDLH LCDDAHTASD  60
   61 YPPDWDIES

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [345-519]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAMQVTLYQV LIDVYPKAHA QSDRSTWMRY SNTNPIAAWF RNHLSEQFLT LLGNAEGQTT  60
   61 RTRLERCWPQ LIGFFVVLRV HDLTIQCVSD MNTKKDALTN LFESERHLHS LPSDQQIVHV 120
  121 EFGAFYHPHS DKLPVPNSAV YFQLGPFTIS FDERTMRWCC YVAHALSSAI EDGNL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [520-624]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPENELDIQP PTIKVNLVMP RLVLNLPGPF TDFNFPRRLV TSMSTLSISS SQIDFKENSR  60
   61 FRILSESTDE HSDVKNQLIN GLNKFHICTS PVWIEIDHGP QTKGF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [625-745]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFLHDVSFNG ILAIDKDKVN VLVEPAEDVA VVVDHYQFLQ LTRLGDKFTK FLDQLTLDMK  60
   61 HYNTNKPKSD VTVDFLASIA RIRLYIVLTM GEIASPYDSA AMSNFNHSFM DRLSGMLLFF 120
  121 Y

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle