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View Structure Prediction Details

Protein: vab-3
Organism: Caenorhabditis elegans
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vab-3.

Description E-value Query
Range
Subject
Range
vab-3 - 'Paired box' domain, homeobox protein (paired subfamily) status:Confirmed UniProt:Q17359 protein_id:...
146.0 [0..20] [296..179]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISAHAPIVS IKAPLPTRRA STIRKTARVG KFSPYEDQKP PTEPEDDAAA RMRLKRKLQR  60
   61 NRTSFTQVQI ESLEKEFERT HYPDVFARER LAQKIQLPEA RIQVWFSNRR AKWRREEKMR 120
  121 NK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1fjlA
Description: Paired protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [123-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSSGTMDSSL SNGTPTPTPG SVTGSNMTNP IGSPASTPNR FPSNNSANLP TTNFVPQTSQ  60
   61 MYAGLSQPAM DPYSFGIANG FSMAPYPQVT DFQPHHMFQG RSPYDFPYPR MPTNGHGFQQ 120
  121 SMSPATTAVG DIPTLSSGMS LPVSAVLNSI DPSLTHSQMH ELSDLTQEHY WRPQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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