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View Structure Prediction Details

Protein: lin-9
Organism: Caenorhabditis elegans
Length: 644 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-9.

Description E-value Query
Range
Subject
Range
lin-9 - status:Confirmed UniProt:P30630 protein_id:CAA77454.2
1000.0 [0..1] [644..1]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVRSPRK KAASDTSDPD RTSSPYSLRE TSKVPSRYRN EELYLSPSRS IKRTGSPKKS  60
   61 PAKRLNGGRD SPSVNSLTRN SSLTMLAKAA LDYESSSCAL EYIFQPKEER RPPRRALALS 120
  121 PPPAPSNDLL AKDLEMIEMH QNLVAGLDDL DNPANMTNEA VEHRDTQSFF NMFSTDQERS 180
  181 AMMKQFKTYK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [191-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQTSEDVSTF MRANIKKLYN LLRYKKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [218-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQWVMCEFFY SAIDEQIFKE ENEFATIIRE SFPNLKNWNL TRIEWRSIRK LLGKPRRCSK  60
   61 VFFEEERMYL EEKRMKIRSV YEGSYLNDPS IDLKDLPAKL PRPMVVGNRV FARIRNPYDG 120
  121 IYSGIIDAVI PKGFRIIFDK PDIPPTLVSD TEIL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 71.744727
Match: PF06584.4
Description: No description for PF06584.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [372-456]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDGKLDLLSI AYFIEQANSK LPSGVRPFVA AVRDSSHPHL VRDVLVSRKI ERSGGPLMGP  60
   61 NDERLNGKNA EMVGNFPLKF LVNLV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [457-644]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLTKLIDIKK GLIRQLNELN ADAEIQNMTS DKYSKAFQEK YAKTIIDLEH VNQNIDINMN  60
   61 GIQDHHMYFS SNDISTSNMK PEAVRQMCSQ QAGRFVEHCN QGLNVENVHA LTLIQSLTAV 120
  121 LLQVRTMGTQ KISAVDLQSL GDAISEIRTA IHPRNVAFFQ DYVEVHMKQF HTIMLESGAL 180
  181 AGTVSNRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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