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View Structure Prediction Details

Protein: lin-9
Organism: Caenorhabditis elegans
Length: 642 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-9.

Description E-value Query
Range
Subject
Range
lin-9 - status:Partially_confirmed UniProt:P30630 protein_id:CAC42391.1
973.0 [0..1] [642..1]

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Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVRSPRK KAASDTSDPD RTSSPYSLRE TSKVPSRYRN EELYLSPSRS IKRTGSPKKS  60
   61 PAKRLNGGRD SPSVNSLTRN SSLTMLAKAA LDYESSSCAL EYIPKEERRP PRRALALSPP 120
  121 PAPSNDLLAK DLEMIEMHQN LVAGLDDLDN PANMTNEAVE HRDTQSFFNM FSTDQERSAM 180
  181 MKQFKTYKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [190-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTSEDVSTFM RANIKKLYNL LRYKKAR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [217-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QWVMCEFFYS AIDEQIFKEE NEFATIIRES FPNLKNWNLT RIEWRSIRKL LGKPRRCSKV  60
   61 FFEEERMYLE EKRMKIRSVY EGSYLNDPSI DLKDLPAKLP RPMVVGNRVF ARIRNPYDGI 120
  121 YSGIIDAVIP KGFRIIFDK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 71.744727
Match: PF06584.4
Description: No description for PF06584.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [356-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDIPPTLVSD TEILLDGKLD LLSIAYFIEQ ANSKLPSGVR PFVAAVRDSS HPHLVRDVLV  60
   61 SRKIERSGGP LMGPNDERLN GKNAEMVGNF PLKFLVNLVK LTKLIDIKKG LIRQLNELNA 120
  121 DAEIQNMTSD KYSKAFQEKY AKTIIDLEHV NQNIDINMNG IQDHHMYF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [524-642]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNDISTSNM KPEAVRQMCS QQAGRFVEHC NQGLNVENVH ALTLIQSLTA VLLQVRTMGT  60
   61 QKISAVDLQS LGDAISEIRT AIHPRNVAFF QDYVEVHMKQ FHTIMLESGA LAGTVSNRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle