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View Structure Prediction Details

Protein: acl-9
Organism: Caenorhabditis elegans
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-9.

Description E-value Query
Range
Subject
Range
gi|157764008 - gi|157764008|ref|XP_001674347.1| Hypothetical protein CBG18941 [Caenorhabditis briggsae AF16]
gi|187024226, gi... - gi|39594308|emb|CAE71886.1| Hypothetical protein CBG18941 [Caenorhabditis briggsae], gi|187024226|em...
277.0 [0..1] [399..1]

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Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLNEPPVL GAGQQIGTRL KGWFFGAAML LSAFFGVLYI VTPLVVLLFL KPRLWRQMLD  60
   61 R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [62-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVGIWVIMPG ALCNYIFGAN IRIKGDFINH EEPALIIMNH RTRLDWLFFW NALYKMDPWL  60
   61 CTTEKISLKG MLKYVPGAGW AMQAASYIFL DRSFDTDKTK LDNILNYYAE TEYKYQLLLF 120
  121 PEGTDKCPKA TERSRIHSEK KGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [205-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHYQYVLHPR VTGFVHIVQA MRRANNIKYI YDVSIGFGDA IVQSELDIFA HGVCPKEVFY  60
   61 QVIKYPIEAI PQTDEALGQW LVNLWRNKEE KLKRFYEMPR NVRQFPDTPD GVEYELDNNT 120
  121 DRAQKGLIGF WCFTTVFWMF MFFESAFMFY WAIIACVFYA AVHKFYGGLE FLAIDRFNHS 180
  181 KQYGVVGQEP EVLNT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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