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View Structure Prediction Details

Protein: let-49
Organism: Caenorhabditis elegans
Length: 251 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for let-49.

Description E-value Query
Range
Subject
Range
let-49 - status:Confirmed UniProt:Q95Q17 protein_id:CAA21715.1
320.0 [0..1] [251..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPGFGAQTV SPFPNPPEYA SAYTSDRINN GSAPPPPHPL TEFKVYGEEY RLEDDVIAPL  60
   61 KNAGVAELYK NKNNWKTEMK KLNRSAIVAF FDLVEILIRA PDH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 15.086186
Match: PF05983.2
Description: No description for PF05983.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMREEKMVDL HTIFINMHHL INEFRPVQAR DSVRILQERQ IEELSDICKD FKKYLRDGRE  60
   61 VVDDQFQMIR GKLPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1ykeA
Description: Structure of the mediator MED7/MED21 subcomplex
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [179-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPQPSELTRV KLQDGVLHML QETEASDDVE MKEEEGSEYS KKKARLELLS REDGPPSVVH  60
   61 LLARQFHDIS LKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle