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View Structure Prediction Details

Protein: CE28112
Organism: Caenorhabditis elegans
Length: 433 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28112.

Description E-value Query
Range
Subject
Range
gi|109469620 - gi|109469620|ref|XP_001078263.1| PREDICTED: similar to quiescin Q6-like 1 [Rattus norvegicus]
461.0 [0..3] [430..227]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNRYPDWPN LGHIAVDSRT TYGQLWDGVP QKANYMAILF EEYDGVGAQF VMDLISRSHI  60
   61 LGARRALSNS PLVQMLNIRN FPTVALFRRD HQQALYMQRY TNQTVKDIDD AITNDMEQGG 120
  121 RRAPILTTTL APVTTTTNTP LIDCHSHPER CRDMYYVSET DMLKAMRMAL LDEVTRVPGA 180
  181 IRGDNFTNLH EFMTLLSNHF PVLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQNDIRRMRA KRTTSVILRN SERARLVFTH MREFLEGRKS IGSVSSDEYR RQFESVERV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [264-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YASPFPVNST WQHCKGSSPM YRGYTCGLWT TFHALTVHTY IDTIKDDYVN PMKPLSTIQG  60
   61 WVKSYFGCEH CRNHFMHMTT TLFPLNERRV RHPHDMMTYL WRAHNIVNNR LHGDSTEDPQ 120
  121 FTKMQFPAPF LCPTCHSGGQ FSRRQIRNFL LRYYGSIKPH NRLADQRLAF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.522879
Match: 1oqcA
Description: Augmenter of liver regeneration
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.090807370772125 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle