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View Structure Prediction Details

Protein: CE28012
Organism: Caenorhabditis elegans
Length: 564 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28012.

Description E-value Query
Range
Subject
Range
gi|7500009 - gi|7500009|pir||T16189 hypothetical protein F27D9.7 - Caenorhabditis elegans
661.0 [0..1] [556..1]

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Predicted Domain #1
Region A:
Residues: [1-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLDDFISWK KEQQNLIEHD VTVLLRHNYE GGIAYSNGIC SKNSLMISGF LPDATMNNAW  60
   61 VFMHQLAHVI GLTHKQQTKC ECNTAINGSG FPECSVQEMV DKLSNSSCLI QESPSFAKNT 120
  121 VVPKKGSLPV CGNGLQEDEE ECDCGPERFC DNILCDAVKC RFIVQKAYLT TFIPLGFAFI 180
  181 AFVILLFGKY CLCSLFASLR NTGHREQMEK NRGDIENLND VDVEQAPMRS YIIILFAISI 240
  241 SLFICTIYCC PNEPTEILFI IKASYYLSEY QWESVKALLG KVSGSVNLGR SSEASQIGVY 300
  301 LFDNLNMPVP VIGLGTYGRS SDLKTAVSKL KLLPCGTWCA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.09691
Match: 2dw0A
Description: No description for 2dw0A was found.

Predicted Domain #2
Region A:
Residues: [341-564]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQTQKTDAEQ ITSILTKQAF TRPAKIFIIT SEYIDSYSLH TLVTTANNLV IQQVIIPQTP  60
   61 GVVSYDAPYY NYYRAYYDNY RRYASRMEQV YPYMHVEIPS DQYQFIQQDT RYGNYDYESW 120
  121 PSSTCYSLIG CQECMTSPAI LPSVDSTAET VQTSEATAEN SDSGTIHSGD SKHTENIIDT 180
  181 NRKLSAELVT EKAIIPTTPP TEDYEYEITG DPPGSKRFYF YFSQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle