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View Structure Prediction Details

Protein: glr-8
Organism: Caenorhabditis elegans
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glr-8.

Description E-value Query
Range
Subject
Range
gi|73973947 - gi|73973947|ref|XP_539059.2| PREDICTED: similar to glutamate receptor 6 isoform 1 precursor [Canis f...
376.0 [0..1] [474..418]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGRTLKMVV PAIEPPYVNY VNFSDAAVTD KGYGPGVVME ILKEIGKRLN LTYEILPALG  60
   61 STWGEYLNGS WTGAFGQLVR GEVDLLAGGA IMEYDRSVIA DLTYPFQFEP TGIMIRSPEK 120
  121 YEDDTLLIVT EPFSWEVWVI TAAVILISGV IFLVMTNIIR KVYEEMTVTP FE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.154902
Match: 2v3tA
Description: No description for 2v3tA was found.

Predicted Domain #2
Region A:
Residues: [173-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIWVFFSIFV QQGLPEQPRS WSCRVLVALW WLASITLSAT FTGSLVALFA VDKTNVPFQN  60
   61 IDQLVRLVKQ GKFEIVMDEN SFTRTEMIAR SKLPVYRDLW HEMIVNHKVK YVNGIARGVA 120
  121 FVRANPGYAL LGPMATLNFY AYSDCKVILF NDGILPVYLS IPLVKNSIYS PYFSTKIREM 180
  181 VERGFTQKWI ADYRSYVAMQ K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.30103
Match: 2i0bA
Description: No description for 2i0bA was found.

Predicted Domain #3
Region A:
Residues: [374-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INECNSTTIG PKSYLDLKRA QGAFWVFLGG AGLGLALFVG EFIFKFFREK MTKHTKTTTV  60
   61 PPEVATVSAN VAENSTSLDI PDEVLPSAPL PSEDGNWSLR RRNILNLSLD LSNIAN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle