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View Structure Prediction Details

Protein: vhp-1
Organism: Caenorhabditis elegans
Length: 606 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vhp-1.

Description E-value Query
Range
Subject
Range
vhp-1 - protein tyrosine phosphatase status:Confirmed UniProt:Q10038 protein_id:AAK68299.1
314.0 [0..6] [606..49]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGQPFEAFR KNRKRKKTKN KKKRRNNNNS KNKTPNTFPN EIEEQDPVSS LPTFPAKKFG  60
   61 LKLQLTLTSS PTNSSSPISS SSPTNGGFKQ FAQQYPQLCE SSEGMTRLPQ SLSQPCLSQP 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 2oucA
Description: No description for 2oucA was found.

Predicted Domain #2
Region A:
Residues: [121-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGDGITLITP NIYLGSQIDS LDETMLDALD ISVVINLSMT CPKSVCIKED KNFMRIPVND  60
   61 SYQEKLSPYF PMAYEFLEKC RRAGKKCLIH CLAGISRSPT LAISYIMRYM KMGSDDAYRY 120
  121 VKERRPSISP NFNFMGQLLE YENVLIKDHV LDYNQASRPH RHMDYYGPSD LCPPKVPKSA 180
  181 SSNCVFPGST HDESSPSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.0
Match: 2g6zA
Description: No description for 2g6zA was found.

Predicted Domain #3
Region A:
Residues: [319-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVSEGSAAS EPETSSSAAS SSSTASAPPS MPSTSEQGTS SGTVNVNGKR NMTMDLGLPH  60
   61 RPKALGLPSR IGTSVAELPS PSTELSRLSF NG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [411-606]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEAIAPSTPI LNFTNPCFNS PIIPVASSSR EVILTLPTPA ASSSSSTSSE PSFDFSSFES  60
   61 SSSSSIVVEN PFFASTEVPA GSSSISTPSG SQSTPASASS SAASRCRMKG FFKVFSKKAP 120
  121 ASTSTPASST PGTSRAARPE CLRSSGIIIS APVLAITEEE DAESPESGFN EPEVGEEDDD 180
  181 SVSICSTSSL EIPCHQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle