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View Structure Prediction Details

Protein: gly-2
Organism: Caenorhabditis elegans
Length: 669 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gly-2.

Description E-value Query
Range
Subject
Range
gi|15375050 - gi|15375050|gb|AAK94765.1| GLY-2 [Caenorhabditis elegans]
1095.0 [0..9] [669..1]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRHRCVAL LFIFSAFITP LGFFYYTISN ESKRYSEESE KNYGYQTLEF TESPEEISVD  60
   61 FDKYSQSECS RFPSNVEIEY PECLNKMKWI KNGWKTHHCY IENHIDGSEC SFRYYLSQVE 120
  121 NYCPPMEHHG KRKGLAKISP SIRRLLPIFE SIPHYMKTRI NRLWKKWKEG AHEVMQKYPK 180
  181 SMIERRKLNV LVFIGFLANE QKLNMAKKSD HGGPLGELLQ WSDLLATLSV IGHHLEVSTN 240
  241 KNTLR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [246-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIVWKYMSRG PCQYVNNFRQ QLDIIFTDIM GFNILRQHHR QFLLSNR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [293-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRIRLLDSFG THAEFTTKTY FVQNKKSLSG PFSQRNPWGG HGLDLRQHWT FYP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [346-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSDDNTFLGF VVDTEGIDKK NNQMIPSALV YGKEQYMWRD AEKPIDVLKR IVTVHSTVAD  60
   61 LDLKDSNISS IFKKVQNHGF LNSEEISQLL DNITIFFGLG FPLEGPAPLE AMAHGAVFIN 120
  121 AKFKEPKSRL NYKFLAEKPT LRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [489-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WTSQNPYMEK IGEPHVITVD IFNELELEEA IKRAISLKPK HFVPFEFTPA GMLHRVALLL  60
   61 EKQELCDKIA YSKRW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [564-669]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPIDQMKIFR TLNADDSCET ICHSKQLLCE PSYFPIINSS PLLRRENLCS STTSDSSPFA  60
   61 PFNCTIQQSA FLFSCASSPP ISFEINRLCP CRDYIPEQHA ICKKCL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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