YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE27807
Organism: Caenorhabditis elegans
Length: 393 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27807.

Description E-value Query
Range
Subject
Range
gi|114670980 - gi|114670980|ref|XP_001164327.1| PREDICTED: prolyl 4-hydroxylase, beta subunit isoform 5 [Pan troglo...
313.0 [0..12] [389..19]

Back

Predicted Domain #1
Region A:
Residues: [1-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRWLSLLLF CPALLNAEVV SLTSQNFEQT IQANELVFVN FYADWCRFSQ MLKPIFLEAS  60
   61 EKFKDAAPGK IMWASVDADK NNDIATKYHV NKYPTLKLFR NGEAAKREYR SSRSVEALSE 120
  121 FINKQMEVTV KKFIEKNALQ AAHNPEKNTF IGYFHDENSV EYKNLMNVAM FYRDECEFMV 180
  181 GIGDLNFPGE APAAGQPPKL VFQPSNKAVN PAQIPFSGDF ATYEYLKQWV ADKCVPLVRE 240
  241 ITFQNAEELT EEGLPFMILF KKSDDKVSEK IFTDAIVREL PDQRKAINCL VGDGTIFKHP 300
  301 LSHLGKSESD LPVIAIDSFR HMYLFKNFED VNVPGKLREF VLDLHSGKLH REFHHGPDPV 360
  361 TGNQAPDTEP PPSTFEKLKP ASSRYTILDK TEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.221849
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle