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View Structure Prediction Details

Protein: nhx-9
Organism: Caenorhabditis elegans
Length: 647 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhx-9.

Description E-value Query
Range
Subject
Range
gi|28478878, gi|... - gi|75832049|ref|NP_001028461.2| solute carrier family 9 (sodium/hydrogen exchanger), member 2 [Mus m...
375.0 [0..3] [638..64]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHEYDIEEL FTWKWDDVHH VYVITVWLLI ASLAKILFNL MKPISKWCPD SSLLIIVGLA  60
   61 LGWILHQTSL SGATLDSHTF FLYLLPPIIF DAGYFMPNRA LFENFDSVLV FSVFGTIWNT 120
  121 FAIGGSLLLM AQYDLFTMSF TTFEILVFSA LISAVDPVAV IAVFEEIHVN EFLFINVFGE 180
  181 ALFNDGVTVV LYQMFKSFAL IG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [203-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SENLSVLDYA TGGLSFFVVA LGGAAVGIIF AIAASLTTKY TYDVRILAPV FIFVLPYMAY  60
   61 LTAEMVSLSS IIAIAICGML MKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [286-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YIKGNVTQAA ANSVKYFTKM LAQSSETVIF MFLGLSTISS QHHFDLYFIC ATLFFCLIYR  60
   61 AIGIVVQCYI LNRFRAKKFE MVDQFIMSYG GLRGAIAYGL VVSIPASITA KPMFITATIA 120
  121 VIYFTVFLQG ITIRPLVNFL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [426-647]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIKKKEERDP TMVESVYNKY LDYMMSGVED IAGQKGHYTF IENFERFNAK VIKPVLMRHQ  60
   61 KRESFDASSI VRAYEKITLE DAIKLAKVKN NIQNKRLERI KSKGRVAPIL PDKISNQKTM 120
  121 TPKDLQLKRF MESGENIDSL YTLFSDLLDR KLHEMNRPSV QITDVDGQDD IQDDYMAEVG 180
  181 SRSNLSAMFR STEQLPSETP FHSGRRQSTG DLNATRRADF NV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle