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View Structure Prediction Details

Protein: ric-8
Organism: Caenorhabditis elegans
Length: 566 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ric-8.

Description E-value Query
Range
Subject
Range
gi|55731006|emb|... - hypothetical protein [Pongo pygmaeus]
gi|55731006 - gi|55731006|emb|CAH92220.1| hypothetical protein [Pongo abelii]
618.0 [0..13] [560..1]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEELHSDLI ASIFGGKPAK IEEFFSKWNF ANAAVSKFDM ANSAKNELGD RICEVIENGE  60
   61 LTHVLLETIK ILSREKDGLE GLLNDPLCDK ILAFAELSSN EN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSKTVHTLME AQKCLINTLF HSQRMRDRFY ANPKTGENLQ FFLGEFEENR RKTSSIDWIR  60
   61 LLNPVQAAEI WYFYHRIAFI ATALGREFQK NWANDPKTID SLLLAVEICT NRSENSTQDI 120
  121 NRATEALKTF FNVFCHFHGD VKAIDHKNAA KTCQILRDAI CSDVLTDDVV QSAIHCLSVP 180
  181 PLPMVLSVLC GKNSKNNGGE NEEEKFFVEE LSNMQLTEAI LMHLDKQLTK VVALLLNDAP 240
  241 NQQQNPM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [350-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSAEASTLTD LVGPYFQVLA RLCTDSKYVR RYCRIRVIPP LVSEEVQKRP EENNTLRGRI  60
   61 ARIMMLPSST KDVAAEFLFI ICKRSVNRMI KYLGFGHSAG HLANLGLLGQ INQPKHASDS 120
  121 EDSETEDYNQ IKDSVNPVTG AIYPSDHGSA LAGMSEEQKE YEAMKLVDAM NQMMETGIVK 180
  181 PGTIGDDGKI REVSHVLELL KNAPEPAPAE NSDSDEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle