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View Structure Prediction Details

Protein: CE27477
Organism: Caenorhabditis elegans
Length: 238 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27477.

Description E-value Query
Range
Subject
Range
gi|78363443, gi|... - gi|78485157|ref|YP_391082.1| ATP-dependent metalloprotease FtsH [Thiomicrospira crunogena XCL-2], gi...
287.0 [0..3] [238..222]

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Predicted Domain #1
Region A:
Residues: [1-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGAPARFPR ISGVTVARKV RKHRDYSNPE TPNFTAQLFT IIVLGGLLLG GSGEEEQTLN  60
   61 QLLVEMDRMG SGNGAVVVLA STNRADVLDK ALLRPGRFDR HISIDLPTVL ERKDMFELYM 120
  121 RKIKLDHAPQ EYSQRLAVLT PSFTGADIMN VCNESAIRAA SNKCHVVTIK DMEYALDRVL 180
  181 AGSEKRSRSL VEEEREVVAY HEAGHALVGW MLEHTDALLK VLRGDSEKML KWKFSGEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.0
Match: 2ce7A
Description: EDTA treated
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle