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View Structure Prediction Details

Protein: flr-1
Organism: Caenorhabditis elegans
Length: 638 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flr-1.

Description E-value Query
Range
Subject
Range
gi|39583224, gi|... - gi|39583224|emb|CAE61442.1| Hypothetical protein CBG05329 [Caenorhabditis briggsae], gi|187035152|em...
gi|157771642 - gi|157771642|ref|XP_001677641.1| Hypothetical protein CBG05329 [Caenorhabditis briggsae AF16]
461.0 [0..1] [638..1]

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Predicted Domain #1
Region A:
Residues: [1-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METETESERI YLQLYDYETK EFSGLTTYHG LVRIYNSNTW PSRIFWVVVV LSCLSLFMIH  60
   61 SGYLLLGYHA KPTLFQTNTI VPMNGLLFPE VTICNLNPLN TTKLEELNIS KSTWTYIFGY 120
  121 FDEITTSEHK STKLGEEQFL EIMNNYQELT KQEFNVKNFL KSVSKSCEET FISCSFGREK 180
  181 LHNCCEHVTT EMTEVGVCFR LSNVNKKYRQ WYSGNGFGWE FVLNGNNEID DHADSLDFEP 240
  241 DRGFLIMVHE SEKYPKINSY GVAVSPDSQL HAAISMKNIS LLDKANWGSC SKGWNRNDTD 300
  301 VPYTATHCEI DCKLRKVRNL CGCSPLAYSA RESGSNDTIC TPYQIQQCFR KVRGLDNRWE 360
  361 DECDCPSECN MLEFDVTNSY SDLDGRSRGL SSSKVESDIS HVSLYFSHVA YERIEQQKQL 420
  421 QTADLLSNIA GSMGLFLGMS TVTLLEIFIY LFKSVWGTVN STRQQQF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 109.0
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #2
Region A:
Residues: [468-638]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDAVAEEEKE RSESIVIIQN GRNDDMDDQK PSRFPGADRK LSGNSIHIHL DRRNSRMIRG  60
   61 GDLSAASRGS VSIPSQLLSP LSRHNRQSIS YGQLGRKVSA IGIPLQPNHD TVESGTSLMP 120
  121 PKSPIRRCST STTPSMLTRK LSFASQQSDP AQPAHQSRKV STSSIFKSQL I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle