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View Structure Prediction Details

Protein: ttx-3
Organism: Caenorhabditis elegans
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ttx-3.

Description E-value Query
Range
Subject
Range
gi|73947291 - gi|73947291|ref|XP_541354.2| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...
162.0 [0..16] [342..2512]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFQSLSADP LDSVNTTTDF NQLAQLLLML TNSSSKETIA THVVTNSVPS AFQFDWSSHF  60
   61 KEEYDLVEKL NSPQYTNLTS ISPSSSTDSN NLILRQIQIP KIEPALLNQC CLCTFAIVDK 120
  121 EISVVDGKYY HNNCLRCQMC DIPFEYSDKC YVRDGVFLCR ADHAKRYQKC CRKCEIPLNR 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #2
Region A:
Residues: [181-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDMVMKAKEM IFHHACFVCF ICGIKLNPGD YYTMSPQGHL YCHAHYNAVR STVLCEEAAV  60
   61 ATVPAVVAPP PPPPTTTTAP PPAAPEQPPR EASTEAEAST DEDGNGSGSQ R

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.94
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #3
Region A:
Residues: [292-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKRMRTSFKH HQLRAMKTYF ALNHNPDAKD LKQLAAKTNL TKRVLQVWFQ NARAKYRREL  60
   61 HDGGRSSSPL CVSAPLASMD MNPPLSSSSS GHSTDGYQLN TPPLSSEIYS PNSNYTHL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 2dmqA
Description: No description for 2dmqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle