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View Structure Prediction Details

Protein: CE26853
Organism: Caenorhabditis elegans
Length: 544 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26853.

Description E-value Query
Range
Subject
Range
gi|39589822, gi|... - gi|39589822|emb|CAE67057.1| Hypothetical protein CBG12465 [Caenorhabditis briggsae], gi|187029586|em...
gi|157746727 - gi|157746727|ref|XP_001668459.1| Hypothetical protein CBG12465 [Caenorhabditis briggsae AF16]
407.0 [0..1] [544..1]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDVKKKVL KRKLKQMKDG HEKKKAKEVV VEEPMEEEDE EEVEEEQKHQ TEESSETKVS  60
   61 EFLTKTTFAS LEGKVNANLL KAVQGLGFT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.69897
Match: 2db3A
Description: No description for 2db3A was found.

Predicted Domain #2
Region A:
Residues: [90-544]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMTEIQAKSI DPLLEGKDVL ASAKTGSGKT LAFLLPAIEL LHKLNWKQHN GTGVIIVSPT  60
   61 RELSMQTYGV LSELLEGSNL TYGLVMGGSN RSAEKDKLAK GVSILVATPG RLLDHLQNTD 120
  121 NFLVRNMKCL IIDEADRILD IGFEIEMQQV LRHLPKQRQS MLFSATHSPK VDELVKLALH 180
  181 SNPVRVSVHE KAEEATVEGL QQGYIVAPSD KRLLLLFTFL KKNKTKKVMV FFSSCNSVKF 240
  241 HHELLNYIDI PCMSIHGKQK QQKRTTTFFQ FCQAETGILL CTDVAARGLD IPAVDWIVQY 300
  301 DPTDEPREYI HRVGRTARGT NGSGKALLVL RPEELGFLRY LKAAKVTLNE FEFSWSKVAN 360
  361 IQSQLENLIS KNYYLNKSAK EAYKCYLRAY DSHSLKDIFD VTNMDLTAVS KSFGFSVPPF 420
  421 VDLPISNKPK VEIRSKLSGA GYRKKKQSFT FKAKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.522879
Match: 2v8oA
Description: No description for 2v8oA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle