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View Structure Prediction Details

Protein: CE26206
Organism: Caenorhabditis elegans
Length: 413 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26206.

Description E-value Query
Range
Subject
Range
gi|78395095, gi|... - gi|78395095|gb|AAI07689.1| PCBP2 protein [Homo sapiens], gi|193083112|ref|NP_001122385.1| poly(rC) b...
gi|66911068 - gi|66911068|gb|AAH97410.1| Pcbp2 protein [Rattus norvegicus]
211.0 [0..33] [364..5]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEFTEDSK TQQGVKRTQD ASDGPANKKA HFGGEEEGGD HLSIKILIPS NAVGAIIGKG  60
   61 GEAMRNLKND NNCRVQMSKN SETYPGTSER ICLVKGRLNN IMAVIESIQD KIREKCADQG 120
  121 GSDAFDHKNT SRGAEIKIVM PNTSAGMVIG KSGANIKDIR EQFGCQIQVY PKAGSVEAKT 180
  181 SLERVVTVAH DEASALLQAA SRVLEKVASD PHHASEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.39794
Match: 2annA
Description: No description for 2annA was found.

Predicted Domain #2
Region A:
Residues: [218-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKEDFGKGSG PSGSANSGPS GGGGGGGGGG QSNNNSSFSS VPAFNGGGGG GGGMNVGAAG  60
   61 FGGGGGQGYG GPQFGGQGGP QFGNGNNKYP MSGLGNNELL SFLDNLQSTL RTSGFNEQSV 120
  121 SEVMQAMQVL AKYNIMGLGL GLGVAAMAQM RTGQESQGMS ANHGSAGFGD GYGQGGVQGG 180
  181 PQGPQGGGGD QSYWRR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle