YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: mom-1
Organism: Caenorhabditis elegans
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mom-1.

Description E-value Query
Range
Subject
Range
CG18445-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG18445 (CG18445, FBgn0033476). It is a prote...
275.0 [0..2] [440..11]

Back

Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNGHGYEEF ELLEDGSLGE CSTQVANATF LTISKLICLV VAFKFIKHIP ISTTVRVYVH  60
   61 VFASTFTVMW FSRNHLQSAI IYNMFSLISL ALAIKQFSGY IILAGNISLL IALQNFCRHY 120
  121 RSEDYFLSIR GILMIHIMRL TTVAFNLEKA NSNKFRFVQF SSYVEYIYFP PFIIFGPYLS 180
  181 FEQFFKMRDK KWTGSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [197-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NELGFIIQSL LAIFNAITLA IISSCHFEFF EPSSQFMEDA LTAMSFRFSH YFVCLSTQAF  60
   61 VLMLGSDVVV ANPLNIEFSR STLQTVSEWN KPFHTFLHEN IFKRRLFNST ACNVFFTFAV 120
  121 SSLLHGLDFQ MTITLLALGF IAYSETVFRK RLSARYSMCV AAKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [361-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPVRSNSLSC KHRHSNKTGR ALIINLFFLM LSMYHLVFTG MTFTDDYSAI GYPFDHAWKI  60
   61 WGSHYYSSFM ISFLFLALSK II

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle