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View Structure Prediction Details

Protein: CE25419
Organism: Caenorhabditis elegans
Length: 315 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25419.

Description E-value Query
Range
Subject
Range
gi|114650385 - gi|114650385|ref|XP_001140665.1| PREDICTED: similar to muscleblind-like 1 isoform d isoform 2 [Pan t...
170.0 [0..49] [301..9]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDNENGDNL NNHQDSGSGS HHDAAPQQQQ NNMSHQQQPQ QQQHNEHNKQ QQQQRDDVCR  60
   61 DFLKNICNRG SRCKFYHPSE APPISDHDYN FCIDYQNRGC QRDNCRFVHA PRDEVERYKT 120
  121 TREL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 2d9nA
Description: No description for 2d9nA was found.

Predicted Domain #2
Region A:
Residues: [125-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLILARAIAA VGHGDTIGGI PICKEFQTGR CARGVNRCRY WHVNVDLERD RRNRGLPPSN  60
   61 DFGPGGGGGG MGGGGGSGGS GGGSGRFPPP PPPYG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [220-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGRRRPYDD YDSDPIKRGR YGSDDRLMEL EKRNAELSKE VDSLRRELQR EHDRYEDLYA  60
   61 LFRQQSGGAP APPKAAAAAS AVNDYYGTWG QKAPGW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle