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View Structure Prediction Details

Protein: srs-1
Organism: Caenorhabditis elegans
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srs-1.

Description E-value Query
Range
Subject
Range
gi|25293165 - pir||D97918 serine-tRNA ligase (EC 6.1.1.11) [imported] - Streptococcus pneumoniae (strain R6)
gi|15902416, gi|... - gi|15902416|ref|NP_357966.1| seryl-tRNA synthetase [Streptococcus pneumoniae R6], gi|15457932|gb|AAK...
400.0 [0..1] [433..22]

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Predicted Domain #1
Region A:
Residues: [1-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLSQALRS TRISQGIGFA RRFTSSEAST SEESSSAPPV MRPDLNFEFL LDEKNLEAIR  60
   61 ENILNRKGVG DIDKVHKKWA VIQKMMKSGE KQTNGAVSEQ KYKQLWDELY DEAILIPNMT 120
  121 QDGVPRGSED QAKIVAEWGE KREDECLTAE KLVQTWRSLL HPTDASGQRS YVFLGALASL 180
  181 EKALLDYAHE RVCALGFRPI TVPDIVSGEV TQACGVMQRS DHPIQYTLAG EESHTKLSGT 240
  241 AEMGIAAFLR GRTFNQDQLP IRLVSLSRCF RTEISKSASE AKLYRVHEFS KVEMFVVSTP 300
  301 EQSAAELDYL VEVQKGTFQA LGVHCRQLEM PSEELGASAA RKFDIEAWMP GRKLYGEVSS 360
  361 ASNCTDFQSR RLGIKYKTAD GTTKYAHTCN GTALASTRAL ISVLETFQND KKGLGELPEP 420
  421 LRKRVKQRGS PLRFQPAKSL V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 101.0
Match: 2dq3A
Description: No description for 2dq3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle