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View Structure Prediction Details

Protein: lag-1
Organism: Caenorhabditis elegans
Length: 671 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lag-1.

Description E-value Query
Range
Subject
Range
lag-1 - DNA-binding protein status:Confirmed UniProt:Q9TYY1 protein_id:AAC68978.3
1141.0 [0..1] [671..1]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLAYSTHDN FYESPKTPQP TWDHVHAQFP LGEPARNLDK FIEAMFQSVS PLAGVAAAPS  60
   61 QIAALQQIQA LMTFQMQQNN LFPKIDTISK SPTPELASPS AKRMRLSPST SSHSDVASTS 120
  121 KGTNGQDQSK NSPTNSDPFY TIGQSTPNTS SFLDTSNSSF GAPSTVVANP MTNYQLAFQA 180
  181 KLGSLHSLIG D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [192-671]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVQSLTSDRM IDFLSNKEKY ECVISIFHAK VAQKSYGNEK RFFCPPPCIY LIGQGWKLKK  60
   61 DRVAQLYKTL KASAQKDAAI ENDPIHEQQA TELVAYIGIG SDTSERQQLD FSTGKVRHPG 120
  121 DQRQDPNIYD YCAAKTLYIS DSDKRKYFDL NAQFFYGCGM EIGGFVSQRI KVISKPSKKK 180
  181 QSMKNTDCKY LCIASGTKVA LFNRLRSQTV STRYLHVEGN AFHASSTKWG AFTIHLFDDE 240
  241 RGLQETDNFA VRDGFVYYGS VVKLVDSVTG IALPRLRIRK VDKQQVILDA SCSEEPVSQL 300
  301 HKCAFQMIDN ELVYLCLSHD KIIQHQATAI NEHRHQINDG AAWTIISTDK AEYRFFEAMG 360
  361 QVANPISPCP VVGSLEVDGH GEASRVELHG RDFKPNLKVW FGATPVETTF RSEESLHCSI 420
  421 PPVSQVRNEQ THWMFTNRTT GDVEVPISLV RDDGVVYSSG LTFSYKSLER HGPCRIVSNY 480
  481 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1ttuA
Description: Crystal Structure of CSL bound to DNA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle