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View Structure Prediction Details

Protein: sel-10
Organism: Caenorhabditis elegans
Length: 587 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sel-10.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
588.0 [0..5] [583..1183]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPRNDVHMD DGSMTPEDQE PVTDNDMEYN DNGEESSYSN GSSSSYNADK LSSSRPLQHK  60
   61 LDLSASPSRN N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-587]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLNPRVEHLI ALFKDLSSAE QMDAFTRLLQ ESNMTNIRQL RAIIEPHFQR DFLSCLPVEL  60
   61 GMKILHNLTG YDLLKVAQVS KNWKLISEID KIWKSLGVEE FKHHPDPTDR VTGAWQGTAI 120
  121 AAGVTIPDHI QPCDLNVHRF LKLQKFGDIF ERAADKSRYL RADKIEKNWN ANPIMGSAVL 180
  181 RGHEDHVITC MQIHDDVLVT GSDDNTLKVW CIDKGEVMYT LVGHTGGVWT SQISQCGRYI 240
  241 VSGSTDRTVK VWSTVDGSLL HTLQGHTSTV RCMAMAGSIL VTGSRDTTLR VWDVESGRHL 300
  301 ATLHGHHAAV RCVQFDGTTV VSGGYDFTVK IWNAHTGRCI RTLTGHNNRV YSLLFESERS 360
  361 IVCSGSLDTS IRVWDFTRPE GQECVALLQG HTSLTSGMQL RGNILVSCNA DSHVRVWDIH 420
  421 EGTCVHMLSG HRSAITSLQW FGRNMVATSS DDGTVKLWDI ERGALIRDLV TLDSGGNGGC 480
  481 IWRLCSTSTM LACAVGSRNN TEETKVILLD FDAVYP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.221849
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle