| Protein: | gar-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 667 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar-2.
| Description | E-value | Query Range |
Subject Range |
|
|
357.0 | [0..1] | [667..1] |
|
Region A: Residues: [1-274] |
1 11 21 31 41 51
| | | | | |
1 MAVASVLLAL FMLFLSIVTV IGNLAVLLSY YLDKNIRQPT NYFIFSLAIS DLLIGLEGIP 60
61 VYTAFYLNNN EWIWGDVLCD LWLSIDYIVC LASIYTVLGI TVDRYYSVKK PATYRNWRTP 120
121 GRVVLIIIFI WLVPSILFSV SIFGYGTFTG TGRILKETEC YVQFMTNPYL NMGMYISYYW 180
181 TTLFVMLYLY WGIYRAAKKL ALKSDQKTKR LALLTEMRRP EVSVRTSDAG NSSSDSPNDT 240
241 SNSSKCFRTA PPTTTVQTTQ TNVGTPPPVF RNHM
|
| Detection Method: |  |
| Confidence: | 32.09691 |
| Match: | 2j4yA |
| Description: | No description for 2j4yA was found. |
|
Region A: Residues: [275-460] |
1 11 21 31 41 51
| | | | | |
1 TLHNNNMDFT KDNEIVRPPT PPDDNTYSNP NFSMISEQLT NGFSRQEPSS VIERESTAPC 60
61 VSPEPSHASL ENEFNENHHA HFKPELSLPF IDADSVSSMV GHDDLRRAMS IRISRSVSMQ 120
121 GTARATPVIE IVENLEEALK ICENLEELRE DENKNEEEKQ KNGLENGGMN HVIIANDEQQ 180
181 PSTSKE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [461-667] |
1 11 21 31 41 51
| | | | | |
1 SEQKEEMTPE NHDPNEVKVP LIAVSRVESV KSTAGGKVRR LITQMRSHSI RSKRKANKNK 60
61 VSTCSPKSTT SLLLPPSTSS TTRERTRHPV TITLQFQSVL SALNFFQRKK VTREYKSRSE 120
121 NRARKALRTI TFILGSFIIL WTPFYVLATI YGFCETCKAS PSFNTLYTIS YYLCYMNSPL 180
181 NPFCYAMANQ QFKKTLTRIF KGDFRRV
|
| Detection Method: | |
| Confidence: | 2.94 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
