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View Structure Prediction Details

Protein: sel-12
Organism: Caenorhabditis elegans
Length: 444 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sel-12.

Description E-value Query
Range
Subject
Range
gi|25513603 - gi|25513603|pir||E89453 protein F35H12.3 [imported] - Caenorhabditis elegans
625.0 [0..1] [441..1]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSTRRQQEG GGADAETHTV YGTNLITNRN SQEDENVVEE AELKYGASHV IHLFVPVSLC  60
   61 MALVVFTMNT ITFYSQNNGR HLLYTPFVRE TDSIVEKGLM SLGNALVMLC VVVLMTVLLI 120
  121 VFYKYKFYKL IHGWLIVSSF LLLFLFTTIY VQEVLKSFDV SPSALLVLFG LGNYGVLGMM 180
  181 CIHW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [185-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGPLRLQQFY LITMSALMAL VFIKYLPEWT VWFVLFVISV WDLVAVLTPK GPLRYLVETA  60
   61 QERNEPIFPA LIYSSGVIYP YVLVTAVENT TDPREPTSSD SNTSTAFPGE ASCSSETPKR 120
  121 PKVKRIPQKV QIESNTTAST TQNSGVRVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [334-444]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RELAAERPTV QDANFHRHEE EERGVKLGLG DFIFYSVLLG KASSYFDWNT TIACYVAILI  60
   61 GLCFTLVLLA VFKRALPALP ISIFSGLIFY FCTRWIITPF VTQVSQKCLL Y

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle