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View Structure Prediction Details

Protein: jkk-1
Organism: Caenorhabditis elegans
Length: 435 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for jkk-1.

Description E-value Query
Range
Subject
Range
gi|187028057, gi... - gi|39598052|emb|CAE68744.1| Hypothetical protein CBG14676 [Caenorhabditis briggsae], gi|187028057|em...
gi|157769803 - gi|157769803|ref|XP_001676722.1| Hypothetical protein CBG14676 [Caenorhabditis briggsae AF16]
303.0 [0..1] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENVCFQQRL RDLETRVRKW KFLKLGLTEV RLRPRDRRST SVDQKHKECS STSSSPQHQR  60
   61 PNNIGYLTSP MERKFTPLSM KPSPSRRDTE K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DALEYEFLEG YKKSGTLEID GEKQVVDPNE IHIISLLGSG SCGVVESATV RSKLMAVKTM  60
   61 YKNDNKENLK RILRDVRIMS MCNSPFIVTS YGYFMFDSSV KICMQIMSAC CEKLLRRIYH 120
  121 SKLDFFPEFV AGHIVYSAIS ALDYLKEKHS IIHRDIKPSN ILFDDSGNVK LCDFGISGFM 180
  181 TDSMAHSKSA GCPPYMAPER LTIETNSKYD VRSDVWSLGI TVYQLVTGLY PFPLNDMEFT 240
  241 TLTIIANLNL PSPSLREETK RSFSPLFIEF LDLCLRKDVR ERPEYRQLMK HDFYLDYDPA 300
  301 SGSAYKFKAI NGKCNQVADW FVDVIRLSKT EDELKSIPNT PCVN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.045757
Match: 2dylA
Description: No description for 2dylA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle