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View Structure Prediction Details

Protein: CE24801
Organism: Caenorhabditis elegans
Length: 418 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24801.

Description E-value Query
Range
Subject
Range
gi|7495955 - gi|7495955|pir||T19244 hypothetical protein C14A4.2 - Caenorhabditis elegans
568.0 [0..16] [418..372]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLKPRVSA LTRLSAEVRS ASQWIKASNS KTPDDINVEK LFVEKEVQKL LTDLTEIDLE  60
   61 HKVFRPRRTS IQQRSHFALM TEERLEKTRE RMREEARRFL QFVPVKEPRE ESVQILAKDL 120
  121 ELKDFDTSKF VFTDITFDAT DQDRTVVVRE P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [152-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGTLRTANPE EHDRMNRTYY QKPNRSVNPP PLFSDPNLQN ALDKNDHEFV LDWACWFYEP  60
   61 DDPAYVRLSQ LVFDRINESG KFHVVTSTRH FGPFTFYLAL NDNIQKLLNY FGGLGRLSDC 120
  121 ANLVRLQKAV RPDWRVTIAQ GDSDEKIVKD FAKQNARFRD EIQDLLNFIN N

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [323-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLKSDQEQT EHVRERFGVR VDKRKARITS ANIRGADGPL GDLSSEYSVK VVKSEGSGRE  60
   61 GGGGEENKKD EGGRGGGKGR WRSREKRSDD DGKKKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle