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View Structure Prediction Details

Protein: fbxa-107
Organism: Caenorhabditis elegans
Length: 317 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxa-107.

Description E-value Query
Range
Subject
Range
ftr-1 - status:Partially_confirmed UniProt:Q9U2X9 protein_id:CAB54326.1
221.0 [0..1] [316..1]

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Predicted Domain #1
Region A:
Residues: [1-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNLDEKMK SLKISKAPSM SNLPLDAVHK VVEKVEPIDR LSLRKVCRNF RAIVDDKDPG  60
   61 FKSLWLDLFD NTFQFELFDA KSNAIQHDFN GRTCTVQFND REKRCFTRNA LKMALNDVSV 120
  121 LIKNPKFQLE RFIFSTIYED TEDVETAMNW FKSISDSGNL WKVGKIILRT SDCNIPRILS 180
  181 SFQPAVLRSI TIPYHLNLST LVEIFKLEQW KMAKSASIKS CQRSRFPFEN LVHLSKFRLQ 240
  241 LGHFTVADAI KIRDVLLKSA NFNSGTIIVF DPSIIDILRV FDPNYNVMED KGFYNDGEGA 300
  301 KFLITHNDHE MTIKRIL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.19
Match: 1fs2A
Description: Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle